| BDML ID | 86aeaee8-0e8d-4c22-9739-efa5f285da67 (schema: 3.000, status: available) |
| Title | BDML file of the PAR-2 trajectories obtained from time-lapse semi-TIRF microscopy images of fluorescent particles of GFP::PAR-2 in a C. elegans pkc-3(RNAi)embryo |
| License | CC BY license |
| Description | The PAR-2 trajectories obtained from time-lapse semi-TIRF microscopy images of fluorescent particles of GFP::PAR-2 in a C. elegans pkc-3(RNAi)embryo |
| Organism | C. elegans |
| Datatype | single molecule dynamics |
| Local ID | wtPAR-2pkc-3 |
| Basedon | Experiment |
| Contributors | Yukinobu Arata, Michio Hiroshima, Chan-Gi Pack, Ravikrishna Ramanujam, Fumio Motegi, Kenichi Nakazato, Yuki Shindo, Paul Wiseman, Hitoshi Sawa, Tetsuya Kobayashi, Hugo Brandao, Tatsuo Shibata, Yasushi Sako |
| PubMed ID | 27524610 | Contact Information | Yukinobu Arata, RIKEN, Wako, Cellular Informatics Laboratory: Yasushi Sako, RIKEN, Wako, Cellular Informatics Laboratory |
| Summary of methods | See details in Arata et al. (2016) Cell Rep. 16, 1-13. The original move of wtPAR-2/pkc-3 (tiff format) is rotated at 135 degree and processed through Rolling Ball and Kalman filters to obtain wtPAR-2pkc-3_RBKL.avi. The PAR-2 trajectories were obtained from the avi file. Kalman filter slightly reduced the diffusion coefficient. |
| Source | http://ssbd.qbic.riken.jp/data/37-Arata-MolDynPar2/source/wtPAR-2pkc-3.zip (md5) |
| BDML file | http://ssbd.qbic.riken.jp/data/37-Arata-MolDynPar2/bdml/wtPAR-2pkc-3_20200203_bdml3.0.zip (md5) |
| PDPML | None |
Summary of BDML data
Summary of Images
No data.