OMERO is free open source client-server software for managing, visualizing and analyzing microscopy images and associated metadata.
Call for Participation
OMERO allows scientists to securely store their microscopy images while making those images shareable and available from anywhere via the Internet for yourself and other users sharing your OMERO instance. You can also use OMERO to publish your images to the world if you choose to do so.
We are very glad to have Professor Jason Swedlow and his team from the University of Dundee, UK to come to present at this workshop in Kobe Japan. In this workshop you will be able to learn more about OMERO. You can learn how to use the software to visualise and analyse microscopy images through a hands-on tutorial.
It does not assume any programming skills unless stated otherwise.
- The basic usage of OMERO.
- How to transition from manual data processing to automated processing workflows using applications against the OMERO API.
- How to integrate a variety of processing tools with OMERO such as CellProfiler, ImageJ, R.
- Basic programming skills are advantageous, but you will be able to follow in any case
- How to programm and generate output ready for publication.
- We will also demonstrate command line tools available to system administrators to manage an OMERO server.
- It does not assume any programming skills but some familiarity with command line interfaces is advantageous.
No prior knowledge in microscopy, scripting and data analysis is required.
Please note that it is recommended to bring your own laptop to the workshop.
Any student / researcher dealing with scientific images is more than welcome to join this workshop.