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ssbd-repos-000160
- Title: Bidirectional Wnt signaling between endoderm and mesoderm confers tracheal identity in mouse and human cells
- Description: The periodic cartilage and smooth muscle structures in mammalian trachea are derived from tracheal mesoderm, and tracheal malfo…
- Organism: Mus Musculus, Homo sapiens , Strain: C57BL6J/Mouse
- Related Paper: "Methods Mice All mouse experiments were approved by the Institutional Animal Care and Use Committee of RIKEN Kobe Branch. Mi… https://doi.org/10.1038/s41467-020-17969-w
- Contact: Mitsuru Morimoto,
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ssbd-repos-000156
- Title: A set of calcium imaging data in the olfactory system of M. musculus adult
- Description: Two-photon calcium imaging of GCaMP3/6f expressed in olfactory sensory neurons or mitral/tufted cells in the mouse.
- Organism: Mus musculus , Strain: C57BL/6N
- Related Paper: See details in Inagaki et al. (2020) Cell Rep., 31(13): 107814. https://doi.org/10.1016/j.celrep.2020.107814
- Contact: Shigenori Inagaki, Ryo Iwata, Masakazu Iwamoto, Takeshi Imai,
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122-Ikeda-WormSwimming
- Title: A set of time-lapse imaging data of the C. elegans adults during swimming
- Description: Time-lapse imaging data of the C. elegans adults during swimming
- Organism: C. elegans , Strain: N2, egl-4(n479)
- Related Paper: Long-term video recording, Microfluidic device https://doi.org/10.1038/s41598-020-70319-0
- Contact: Yukinobu Arata,
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119-Sakashita-FishVertebrae
- Title: A set of transverse sections of teleost fish vertebral bodies
- Description: Imaging data of transverse sections of teleost fish vertebral bodies
- Organism: M. cinereus, S. melanostictus, K. punctatus, P. altivelis altivelis, L. setigerus, L. litulon, C. abei, Z. nebulosa, Z. faber, M. sagifue, C. saira, H. hilgendorfii, S. oblongus, S. zonatus, C. spinosus, A. hanedai, T. japonicus, P. major, S. japonica, H. typus, S. forsteni, S. pinguis, R. prometheoides, S. japonicus, T. orientalis, T. tonggol, P. olivaceus, H. dubius, M. uradoi, T. pardalis, T snyderi, T. stictonotus
- Related Paper: See details in Sakashita et al. (2019) doi: 10.1002/jmor.20983 https://doi.org/10.1002/jmor.20983
- Contact: Misaki Sakashita & Shigeru Kondo,
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114-Shiura-MouseEmbryoDyn
- Title: A set of RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
- Description: RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount …
- Organism: M. musculus
- Related Paper: See details in Shiura et al. (2019) Scientific Reports, 9(1): 3637. https://doi.org/10.1038/s41598-019-38807-0
- Contact: Kuniya Abe,
- Image View http://ssbd.qbic.riken.jp/image/webclient/?show=project-261
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68-Sakaguchi-NeuronFluo
- Title: A set of imaging data of neuronal circuits labeling with fluorescent proteins in M. musculus
- Description: Imaging data of neuronal circuits labeling with fluorescent proteins in M. musculus
- Organism: M. musculus
- Related Paper: See details in Sakaguchi et al., eLife https://doi.org/10.7554/elife.40350
- Contact: Takeshi Imai,
- Image View http://ssbd.qbic.riken.jp/image/webclient/?show=project-401
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66-Iwata-CellDynOSNMT
- Title: A set of calcium imaging data in the olfactory system of M. musculus adult
- Description: Calcium imaging data in the olfactory system of M. musculus adult
- Organism: M. musculus
- Related Paper: See details in Ryo Iwata, Hiroshi Kiyonari, Takeshi Imai (2017) Neuron, 96(5): 1139-1152. https://doi.org/10.1016/j.neuron.2017.11.008
- Contact: Takeshi Imai,
- Image View http://ssbd.qbic.riken.jp/image/webclient/?show=project-305
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20-Azuma-WormMembrane
- Title: A set of BDML file for digitized cellular dynamics of a C. elegans embryo
- Description: Digitized cellular dynamics of a C. elegans embryo
- Organism: C. elegans
- Related Paper: See details in Azuma and Onami (2017) BMC Bioinformatics 18, 307. https://doi.org/10.1186/s12859-017-1717-6
- Contact: Shuichi Onami,
- In SSBD:database http://ssbd.qbic.riken.jp/resources/?value=28629355+[PMID]&form-submit=Search
- Image View http://ssbd.qbic.riken.jp/image/webclient/?show=project-101
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Ce_NEU_TY
- Title: A set of BDML files for quantitative information about neuronal nuclei in C. elegans adult
- Description: quantitative information about neuronal nuclei in C. elegans adult
- Organism: C. elegans
- Related Paper: See details in Toyoshima et al. (2016) PLoS Computational Biology, 12(6): e1004970 https://doi.org/10.1371/journal.pcbi.1004970
- Contact: Yu Toyoshima,
- In SSBD:database http://ssbd.qbic.riken.jp/resources/?value=27271939+[PMID]&form-submit=Search
- and more unpublished or unlisted datasets.
http://ssbd.qbic.riken.jp/ has been obsoleted on 2020/12/24, but is accessible for backward compatibility.
Please visit the new site https://ssbd.riken.jp/.
Introduction
Systems Science Biological Dynamics repository (SSBD:repository) is an open data archive that stores and publishes bioimaging and biological quantitative datasets that are associated with published or to be published studies. It allows other researchers to access and download those datasets for reference or for further investigations.
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