News and Events
- Nov. 25, 2020: System maintenance
We will be performing some maintenance work on the SSBD:database this week (2020-11-25). You may experience some service outage from time to time.
- Aug. 12, 2020: A new paper on BD5 is published in PLOS ONE
A new paper "BD5: an open HDF5-based data format to represent quantitative biological dynamics data" is now published in PLOS ONE. https://doi.org/10.1371/journal.pone.0237468
- Jul. 23, 2020: BD5 manual was updated.
BD5 manual was updated. http://ssbd.qbic.riken.jp/bdml/bd5.html
- May. 26, 2020: SSBD:database and SSBD:repository video
Shuichi Onami presented SSBD:database and SSBD:repository at the online 2020 OME Community Meeting. You can watch it here https://downloads.openmicroscopy.org/presentations/2020/Dundee/main-talks/Shuichi_Onami.mp4
- Apr. 28, 2020: A preprint paper on BD5 is available on bioarivx.
A preprint paper on "BD5: an open HDF5-based data format to represent quantitative biological dynamics data" is available in bioarivx. doi: https://doi.org/10.1101/2020.04.26.062976
- Feb. 7, 2020: REST API service is now returned to normal
REST API service is now returned to normal operation.
- Feb. 3, 2020: SSBD:repository page is open + some minor updates
We have opened SSBD:repository page. You can find it here http://ssbd.qbic.riken.jp/repository.
We have made some minor updates to the system correcting some errors on past datasets and allowing more quantitative datasets to be accessed by REST API. We have also revised our Japanese page. For more details http://ssbd.qbic.riken.jp/update
*Note: REST API is temporary unavailable (2020-02-03), we shall try to return it to service as soon as possible.
- Jan. 9, 2020: System maintenance notice (3 February 2020)
The system will be under maintenance on 3 February 2019. SSBD database will not be available between 14:00~17:00 JST
- Nov. 20, 2019: 2019 Release
In 2019 there are now 687 BDML files which include 810,685,686 entries, and 4,162 image sets. Please visit the Resources page http://ssbd.qbic.riken.jp/resources/ for more details.
- Nov. 15, 2019: System maintenance notice (20 November 2019)
The system will be updated on 20 November 2019. SSBD database will not be available on that day.
- Sep. 12, 2019: Logo changed
SSBD is now rebranded as SSBD:database with a new logo.
- Sep. 2, 2019: MATLAB connecting to SSBD API released
MATLAB wrapper for connecting to SSBD API is now available at Github. https://github.com/openssbd/MATLAB_SSBDapi
- Aug. 13, 2019: 4D Cell Nuclear Tracking - training course code
4D Cell Nuclear Tracking - training course material is now available on Github
https://github.com/openssbd/4D-cell-nuclear-tracking
- Jul. 24, 2019: Latest update
All the visualization data for quantitative data have been updated.
Error on Keller et al. 2010 had been reported and a new version of BDML/BD5 files have been updated.
- Jul. 22, 2019: System maintenance notice (24 July 2019)
Due to system maintenance, SSBD database will not be available between. 14:00 - 17:00 on 24 July 2019,
- Jan. 4, 2019: System maintenance notice (Date: Jan. 25~28 (JST))
Due to system maintenance, SSBD database will not be available between Jan. 25, 17:00 to Jan 28, 09:00 (JST)
- Nov. 15, 2018: 2018 New Release
453 sets of images and 103 sets of quantitative data were added. Please visit the Resources page http://ssbd.qbic.riken.jp/resources/ for more details.
- Oct. 25, 2018: OMERO Open Workshop in Kobe 2018
OMERO Open Workshop in Kobe 2018
Click here for more details
http://ssbd.qbic.riken.jp/event/omero2018/
- Mar. 23, 2018: System maintenance - some disruption of service
We are migrating to a new server. Some of the services are not available during this period. We hope to provide full service asap.
- Dec. 1, 2017: System maintenance notice (Date: Dec 4 JST)
Due to system maintenance, SSBD database will be unavailable on Monday 4 December 2017
- Oct. 10, 2017: REST API v3 and manual have been released.
A new REST API v3 has been released to support SSBD 3.0. Manual of the REST API has been updated.
- Oct. 3, 2017: BDML schema 3.0 and SSBD 3.0 released!
BDML schema version 3.0, PDPML schema version 1.0, and OMICSBDML version 1.0 have been released. All BDML-files have been updated. 23 BDML-files and 280 image-sets have been added. SSBD database system was updated.
- Jul. 10, 2017: System maintenance notice (Date: July 10 (JST))
SSBD will not be available on 10 July 2017 due to unscheduled maintenance
- May. 20, 2017: SSBD API notice
SSBD REST API full service is now available.
- Mar. 1, 2017: SSBD API notice
SSBD REST API coordsXYZ is currently unavailable due to recent system maintenance. The service will resume shortly. Please check back later.
- Feb. 19, 2017: System maintenance notice (Date: Feb. 20~ (JST))
Due to system maintenance, SSBD database will be unavailable Feb. 20 to 28 (About 9 days, JST).
- Jan. 27, 2017: System maintenance notice (Date: Jan. 27~ (JST))
Due to system maintenance, SSBD database will be unavailable Jan. 27, 5:00 pm to 28, 05:00 pm (About 1 day, JST).
- Nov. 25, 2016: New SSBD API
SSBD REST API "coordinates" is now available to retrieve data for both BDML ver0.15 and 0.18 files. "coordsXYZ" API is also available for backward compatibility, but it will be phased out in the future.
- Oct. 4, 2016: SSBD API notice
SSBD REST API coordsXYZ is currently under maintenance and is unavailable due to recent update. The service will resume shortly after the updates. Please check back later.
- Oct. 4, 2016: 137 BDML-files added
14 BDML-files in C. elegans have been updated and 123 BDML-files in C. elegans, D. discoideum, PC-12 cell, and so on have been added.
- Oct. 1, 2016: System maintenance notice (Date: Oct. 4 (JST))
Due to system maintenance, SSBD database will be unavailable Oct. 4, 2016 13:00 pm to 18:00 pm (About 5 hours, JST).
- May. 20, 2016: 14 BDML-file added
14 BDML-files and the corresponding microscopy images in C. elegans have been added.
- Apr. 11, 2016: OpenSSBD released and Web services updated
OpenSSBD, an open-source version of SSBD, has been released. Viewer and RESTful API have been updated.
- Jan. 18, 2016: 2 BDML-files added
2 BDML-files in M. musculus and microscopy images in M. musculus, R. norvegicus, and D. discoideum have been added.
- Nov. 27, 2015: Phenochar and manuals updated!
Phenochar has been updated (version 3 and 2 for BDML schema 0.15 and 0.18, respectively). Manuals about SSBD-RDF data have been added.
- Oct. 3, 2015: 1 BDML-file added.
1 BDML-file in D. discoideum has been added.
- Aug. 19, 2015: Viewer and RESTful API updated!
Viewer and RESTful API have been updated.
- Mar. 19, 2015: System maintenance notice (Date: Mar. 19 (JST))
Due to system maintenance, SSBD database will be unavailable Mar. 19, 13:00 pm to 18:00 pm (About 5 hours, JST).
- Jan. 30, 2015: System maintenance notice (Date: Jan. 30 (JST))
Due to system maintenance, SSBD database will be unavailable Jan. 30, 09:00 pm to 31, 09:00 pm (About 1 day, JST).
- Nov. 20, 2014: BDML paper published online.
Our BDML paper is published online (http://bioinformatics.oxfordjournals.org/content/early/2014/11/19/bioinformatics).
- Oct. 3, 2014: OmicsBDML schema 0.18 released! 20 files added.
OmicsBDML schema version 0.18 have been released. 20 BDML-files in M. musculus and C. elegans have been added.
- Oct. 1, 2014: System maintenance notice (Date: Oct. 1 (JST))
Due to system maintenance, SSBD database will be unavailable Oct. 1, 2014 11:00 am to 12:00 am (About 1 hour, JST).
- Aug. 28, 2014: BDML schema 0.2 released!
BDML schema version 0.2 has been released. All software have been updated.
- Jun. 18, 2014: BDML schema 0.18 released!
BDML schema version 0.18 have been released. All BDML-files and software have been updated.
- Mar. 17, 2014: System maintenance notice (Date: Mar. 19 (JST))
Due to system maintenance, SSBD database will be unavailable Mar. 19, 2014 10:00 am to 13:00 pm (About 4 hours, JST).
- Mar. 7, 2014: System maintenance notice (Date: Mar. 8 (JST))
Due to system maintenance, SSBD database will be unavailable Mar. 8, 2014 09:00 am to 13:00 pm (About 4 hours, JST).
- Dec. 3, 2013: Visit us at MBSJ 2013 (booth: BioDB6)
Visit us at MBSJ 2013 (booth: BioDB6)
- Dec. 2, 2013: 94 BDML-files added.
94 BDML-files in Zebrafish, and C. elegans have been added.
- Nov. 27, 2013: System maintenance notice (Date: Nov. 27 (JST))
Due to system maintenance, SSBD database will be unavailable Nov. 27, 2013 02:00 pm to 04:00 pm (About 2 hours, JST).
- Nov. 20, 2013: System maintenance notice (Date: Nov. 21 (JST))
Due to system maintenance, SSBD database will be unavailable Nov. 21, 2013 10:00 am to 01:00 pm (About 3 hours, JST).
- Nov. 11, 2013: System maintenance notice (Date: Nov. 12 (JST))
Due to system maintenance, SSBD database will be unavailable Nov. 12, 2013 04:00 pm to 07:00 pm (About 3 hours, JST).
- Oct. 3, 2013: 17 BDML-files added.
17 BDML-files in Zebrafish, D. melanogaster, and C. elegans have been added.
- Oct. 2, 2013: System maintenance notice (Date: Oct. 9 (JST))
Due to system maintenance, SSBD database will be unavailable Oct. 9, 2013 10:00 am to 01:00 pm (About 3 hours, JST).
- Sep. 2, 2013: SSBD database and BDML schema released!
SSBD database was opened. BDML schema version 0.15 and PDPML schema version 0.05 have been finalized and released.