public class OmeroReader
extends loci.formats.FormatReader
IFormatReader
for use in export. This is copied
from the OMERO 2.3 Reader available from: https://skyking.microscopy.wisc.edu/trac/java/browser/trunk/components/ome-
io/src/loci/ome/io修飾子とタイプ | フィールドと説明 |
---|---|
int |
planes |
int |
sizeC |
int |
sizeT |
int |
sizeX |
int |
sizeY |
int |
sizeZ |
core, coreIndex, datasetDescription, domains, filterMetadata, flattenedResolutions, group, hasCompanionFiles, in, indexedAsRGB, metadata, metadataOptions, metadataStore, normalizeData, resolution, saveOriginalMetadata, series, suffixNecessary, suffixSufficient, THUMBNAIL_DIMENSION
コンストラクタと説明 |
---|
OmeroReader(ome.api.RawPixelsStore raw,
omero.model.Pixels pix) |
OmeroReader(omero.api.RawPixelsStorePrx prx,
omero.model.Pixels pix) |
修飾子とタイプ | メソッドと説明 |
---|---|
void |
close() |
protected void |
initFile(java.lang.String id) |
boolean |
isThisType(loci.common.RandomAccessInputStream stream) |
boolean |
isThisType(java.lang.String name,
boolean open) |
byte[] |
openBytes(int no,
byte[] buf,
int x1,
int y1,
int w1,
int h1) |
addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMetaList, addMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMetaList, close, coreIndexToSeries, fileGroupOption, flattenHashtables, get16BitLookupTable, get8BitLookupTable, getAcquisitionMode, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getArcType, getBinning, getBitsPerPixel, getChannelDimLengths, getChannelDimTypes, getCompression, getContrastMethod, getCoreIndex, getCoreMetadata, getCoreMetadataList, getCorrection, getCurrentFile, getDatasetStructureDescription, getDetectorType, getDimensionOrder, getDimensionOrder, getDomains, getEffectiveSizeC, getExperimentType, getFilamentType, getFillRule, getFilterType, getFontFamily, getFontStyle, getGlobalMeta, getGlobalMetadata, getIlluminationType, getImageCount, getImmersion, getIndex, getLaserMedium, getLaserType, getLineCap, getMarker, getMedium, getMetadataOptions, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getMicrobeamManipulationType, getMicroscopeType, getModuloC, getModuloT, getModuloZ, getNamingConvention, getOptimalTileHeight, getOptimalTileWidth, getPixelType, getPixelType, getPossibleDomains, getPulse, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getRotationTransform, getSeries, getSeriesCount, getSeriesMeta, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getSupportedMetadataLevels, getThumbSizeX, getThumbSizeY, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isSingleFile, isThisType, isThisType, isThumbnailSeries, isUsedFile, makeFilterMetadata, openBytes, openBytes, openBytes, openPlane, openThumbBytes, readPlane, readPlane, seriesToCoreIndex, setCoreIndex, setFlattenedResolutions, setGroupFiles, setId, setMetadataFiltered, setMetadataOptions, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries
checkSuffix, checkSuffix, getFormat, getNativeDataType, getSuffixes
public final int sizeX
public final int sizeY
public final int sizeZ
public final int sizeT
public final int sizeC
public final int planes
public OmeroReader(ome.api.RawPixelsStore raw, omero.model.Pixels pix)
public OmeroReader(omero.api.RawPixelsStorePrx prx, omero.model.Pixels pix)
public boolean isThisType(java.lang.String name, boolean open)
isThisType
インタフェース内 loci.formats.IFormatReader
isThisType
クラス内 loci.formats.FormatReader
public boolean isThisType(loci.common.RandomAccessInputStream stream) throws java.io.IOException
isThisType
インタフェース内 loci.formats.IFormatReader
isThisType
クラス内 loci.formats.FormatReader
java.io.IOException
public byte[] openBytes(int no, byte[] buf, int x1, int y1, int w1, int h1) throws loci.formats.FormatException, java.io.IOException
openBytes
インタフェース内 loci.formats.IFormatReader
openBytes
クラス内 loci.formats.FormatReader
loci.formats.FormatException
java.io.IOException
public void close() throws java.io.IOException
close
インタフェース内 java.io.Closeable
close
インタフェース内 java.lang.AutoCloseable
close
クラス内 loci.formats.FormatReader
java.io.IOException
protected void initFile(java.lang.String id) throws loci.formats.FormatException, java.io.IOException
initFile
クラス内 loci.formats.FormatReader
loci.formats.FormatException
java.io.IOException