public class OmeroReader
extends loci.formats.FormatReader
修飾子とタイプ | フィールドと説明 |
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static int |
DEFAULT_PORT |
core, coreIndex, datasetDescription, domains, filterMetadata, flattenedResolutions, hasCompanionFiles, in, indexedAsRGB, metadata, metadataOptions, metadataStore, normalizeData, resolution, saveOriginalMetadata, series, suffixNecessary, suffixSufficient, THUMBNAIL_DIMENSION
コンストラクタと説明 |
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OmeroReader() |
修飾子とタイプ | メソッドと説明 |
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void |
close(boolean fileOnly) |
protected void |
initFile(java.lang.String id) |
boolean |
isThisType(java.lang.String name,
boolean open) |
static void |
main(java.lang.String[] args)
A simple command line tool for downloading images from OMERO.
|
byte[] |
openBytes(int no,
byte[] buf,
int x,
int y,
int w,
int h) |
void |
setEncrypted(boolean encrypted) |
void |
setGroupID(java.lang.Long groupID) |
void |
setGroupName(java.lang.String group) |
void |
setPassword(java.lang.String password) |
void |
setPort(int port) |
void |
setServer(java.lang.String server) |
void |
setSessionID(java.lang.String sessionID) |
void |
setUsername(java.lang.String username) |
addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMeta, addGlobalMetaList, addMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMeta, addSeriesMetaList, close, coreIndexToSeries, fileGroupOption, flattenHashtables, get16BitLookupTable, get8BitLookupTable, getAcquisitionMode, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getArcType, getBinning, getBitsPerPixel, getChannelDimLengths, getChannelDimTypes, getCompression, getContrastMethod, getCoreIndex, getCoreMetadata, getCoreMetadataList, getCorrection, getCurrentFile, getDatasetStructureDescription, getDetectorType, getDimensionOrder, getDimensionOrder, getDomains, getEffectiveSizeC, getExperimentType, getFilamentType, getFillRule, getFilterType, getFontFamily, getFontStyle, getGlobalMeta, getGlobalMetadata, getIlluminationType, getImageCount, getImmersion, getIndex, getLaserMedium, getLaserType, getLineCap, getMarker, getMedium, getMetadataOptions, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getMicrobeamManipulationType, getMicroscopeType, getModuloC, getModuloT, getModuloZ, getNamingConvention, getOptimalTileHeight, getOptimalTileWidth, getPixelType, getPixelType, getPossibleDomains, getPulse, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getRotationTransform, getSeries, getSeriesCount, getSeriesMeta, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getSupportedMetadataLevels, getThumbSizeX, getThumbSizeY, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isSingleFile, isThisType, isThisType, isThisType, isThumbnailSeries, isUsedFile, makeFilterMetadata, openBytes, openBytes, openBytes, openPlane, openThumbBytes, readPlane, readPlane, seriesToCoreIndex, setCoreIndex, setFlattenedResolutions, setGroupFiles, setId, setMetadataFiltered, setMetadataOptions, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries
checkSuffix, checkSuffix, getFormat, getNativeDataType, getSuffixes
public static final int DEFAULT_PORT
public void setServer(java.lang.String server)
public void setPort(int port)
public void setUsername(java.lang.String username)
public void setPassword(java.lang.String password)
public void setSessionID(java.lang.String sessionID)
public void setEncrypted(boolean encrypted)
public void setGroupName(java.lang.String group)
public void setGroupID(java.lang.Long groupID)
public boolean isThisType(java.lang.String name, boolean open)
isThisType
インタフェース内 loci.formats.IFormatReader
isThisType
クラス内 loci.formats.FormatReader
public byte[] openBytes(int no, byte[] buf, int x, int y, int w, int h) throws loci.formats.FormatException, java.io.IOException
openBytes
インタフェース内 loci.formats.IFormatReader
openBytes
クラス内 loci.formats.FormatReader
loci.formats.FormatException
java.io.IOException
public void close(boolean fileOnly) throws java.io.IOException
close
インタフェース内 loci.formats.IFormatReader
close
クラス内 loci.formats.FormatReader
java.io.IOException
protected void initFile(java.lang.String id) throws loci.formats.FormatException, java.io.IOException
initFile
クラス内 loci.formats.FormatReader
loci.formats.FormatException
java.io.IOException
public static void main(java.lang.String[] args) throws java.lang.Exception
java.lang.Exception